libvips/libsrc/format/matlab.c

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2009-02-27 17:52:25 +01:00
/* Read matlab save files with libmatio
*/
/*
This file is part of VIPS.
VIPS is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
/*
These files are distributed with VIPS - http://www.vips.ecs.soton.ac.uk
*/
2009-02-27 18:10:26 +01:00
/*
Remaining issues:
2009-03-01 18:35:24 +01:00
+ it transposes images, I think, since Matlab seems to use column-major order
+ will colour images work? no idea, needs testing
+ it will not do complex images
+ it will not handle sparse matricies
+ it loads the first variable in the file with between 1 and 3 dimensions,
is this sensible behaviour?
+ load only, no save
+ could use much less memory --- we use Mat_VarReadDataAll() to read the
whole variable into mem, then copy to a vips buffer, yuk
2009-02-27 18:10:26 +01:00
*/
2009-02-27 17:52:25 +01:00
/*
#define DEBUG
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif /*HAVE_CONFIG_H*/
#include <vips/intl.h>
#ifdef HAVE_MATIO
#include <stdio.h>
#include <assert.h>
#include <stdlib.h>
#include <vips/vips.h>
#include <vips/internal.h>
#include <matio.h>
#ifdef WITH_DMALLOC
#include <dmalloc.h>
#endif /*WITH_DMALLOC*/
/* What we track during a Mat-file read.
*/
typedef struct {
char *filename;
IMAGE *out;
mat_t *mat;
matvar_t *var;
} Read;
static void
read_destroy( Read *read )
{
IM_FREE( read->filename );
IM_FREEF( Mat_VarFree, read->var );
IM_FREEF( Mat_Close, read->mat );
im_free( read );
}
static Read *
read_new( const char *filename, IMAGE *out )
{
Read *read;
if( !(read = IM_NEW( NULL, Read )) )
return( NULL );
read->filename = im_strdup( NULL, filename );
read->out = out;
read->mat = NULL;
read->var = NULL;
if( !(read->mat = Mat_Open( filename, MAT_ACC_RDONLY )) ) {
im_error( "mat2vips",
_( "unable to open \"%s\"" ), filename );
read_destroy( read );
return( NULL );
}
for(;;) {
if( !(read->var = Mat_VarReadNextInfo( read->mat )) ) {
im_error( "mat2vips",
_( "no matrix variables in \"%s\"" ),
filename );
read_destroy( read );
return( NULL );
}
#ifdef DEBUG
printf( "mat2vips: seen:\n" );
printf( "var->name == %s\n", read->var->name );
printf( "var->class_type == %d\n", read->var->class_type );
printf( "var->rank == %d\n", read->var->rank );
#endif /*DEBUG*/
/* Vector to colour image is OK for us.
*/
if( read->var->rank >= 1 && read->var->rank <= 3 )
break;
IM_FREEF( Mat_VarFree, read->var );
}
return( read );
}
/* Matlab classes -> VIPS band formats.
*/
static int mat2vips_formats[][2] = {
{ MAT_C_UINT8, IM_BANDFMT_UCHAR },
{ MAT_C_INT8, IM_BANDFMT_CHAR },
{ MAT_C_UINT16, IM_BANDFMT_USHORT },
{ MAT_C_INT16, IM_BANDFMT_SHORT },
{ MAT_C_UINT32, IM_BANDFMT_UINT },
{ MAT_C_INT32, IM_BANDFMT_INT },
{ MAT_C_SINGLE, IM_BANDFMT_FLOAT },
{ MAT_C_DOUBLE, IM_BANDFMT_DOUBLE }
};
static int
mat2vips_get_header( matvar_t *var, IMAGE *im )
{
int width, height, bands, format, type;
int i;
width = 1;
height = 1;
bands = 1;
switch( var->rank ) {
case 3:
bands = var->dims[2];
case 2:
height = var->dims[1];
case 1:
width = var->dims[0];
break;
default:
im_error( "mat2vips", _( "unsupported bands %d\n" ),
var->rank );
return( -1 );
}
if( bands > 1 )
type = IM_TYPE_MULTIBAND;
else
type = IM_TYPE_B_W;
for( i = 0; i < IM_NUMBER( mat2vips_formats ); i++ )
if( mat2vips_formats[i][0] == var->class_type )
break;
if( i == IM_NUMBER( mat2vips_formats ) ) {
im_error( "mat2vips", _( "unsupported class type %d\n" ),
var->class_type );
return( -1 );
}
format = mat2vips_formats[i][1];
im_initdesc( im,
width, height, bands,
im_bits_of_fmt( format ), format,
IM_CODING_NONE, type, 1.0, 1.0, 0, 0 );
return( 0 );
}
static int
mat2vips_header( const char *filename, IMAGE *out )
{
Read *read;
#ifdef DEBUG
printf( "mat2vips_header: reading \"%s\"\n", filename );
#endif /*DEBUG*/
if( !(read = read_new( filename, out )) )
return( -1 );
if( mat2vips_get_header( read->var, read->out ) ) {
read_destroy( read );
return( -1 );
}
read_destroy( read );
return( 0 );
}
static int
mat2vips_get_data( mat_t *mat, matvar_t *var, IMAGE *im )
{
int y;
if( Mat_VarReadDataAll( mat, var ) ) {
im_error( "mat2vips", "%s", _( "Mat_VarReadDataAll failed" ) );
return( -1 );
}
if( im_outcheck( im ) ||
im_setupout( im ) )
return( -1 );
for( y = 0; y < im->Ysize; y++ )
if( im_writeline( y, im,
var->data + y * IM_IMAGE_SIZEOF_LINE( im ) ) )
return( -1 );
return( 0 );
}
static int
mat2vips( const char *filename, IMAGE *out )
{
Read *read;
#ifdef DEBUG
printf( "mat2vips: reading \"%s\"\n", filename );
#endif /*DEBUG*/
if( !(read = read_new( filename, out )) )
return( -1 );
if( mat2vips_get_header( read->var, read->out ) ||
mat2vips_get_data( read->mat, read->var, read->out ) ) {
read_destroy( read );
return( -1 );
}
read_destroy( read );
return( 0 );
}
static int
ismat( const char *filename )
{
mat_t *mat;
if( !(mat = Mat_Open( filename, MAT_ACC_RDONLY )) )
return( 0 );
Mat_Close( mat );
return( 1 );
}
static const char *mat_suffs[] = { ".mat", NULL };
/* mat format adds no new members.
*/
typedef VipsFormat VipsFormatMat;
typedef VipsFormatClass VipsFormatMatClass;
static void
vips_format_mat_class_init( VipsFormatMatClass *class )
{
VipsObjectClass *object_class = (VipsObjectClass *) class;
VipsFormatClass *format_class = (VipsFormatClass *) class;
object_class->nickname = "mat";
object_class->description = _( "Matlab" );
format_class->is_a = ismat;
format_class->header = mat2vips_header;
format_class->load = mat2vips;
format_class->save = NULL;
format_class->suffs = mat_suffs;
}
static void
vips_format_mat_init( VipsFormatMat *object )
{
}
G_DEFINE_TYPE( VipsFormatMat, vips_format_mat, VIPS_TYPE_FORMAT );
#endif /*HAVE_MATIO*/